PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G226900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 1112aa    MW: 122630 Da    PI: 6.5898
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G226900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22140241199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Manes.02G226900.1.p 140 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI- 227
                          99*****************************9445444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++l+++++r+
  Manes.02G226900.1.p 228 -RDEKQQLLLGIRRA 241
                          .5688889****997 PP

2Auxin_resp118.84.5e-39266349183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+v+YnPras+seFv++++k+ ka+  ++vs+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+
  Manes.02G226900.1.p 266 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 349
                          79******************************998669********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
SuperFamilySSF1019365.1E-43130269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-41131255IPR015300DNA-binding pseudobarrel domain
CDDcd100177.15E-19139231No hitNo description
PROSITE profilePS5086311.97140242IPR003340B3 DNA binding domain
SMARTSM010196.1E-23140242IPR003340B3 DNA binding domain
PfamPF023621.4E-20140241IPR003340B3 DNA binding domain
PfamPF065073.1E-34266349IPR010525Auxin response factor
PROSITE profilePS5174527.0579991083IPR000270PB1 domain
PfamPF023091.3E-610001084IPR033389AUX/IAA domain
SuperFamilySSF542771.86E-610121077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MKMPANGAGV SSAATTSCVT TSNPSEGGEK KSINPELWQA CAGPLVSLPA AGTLVVYFPQ  60
GHSEQVAASM KKDVDAHIPN YPSLPSKLLC LLHNVTLHAD PETDEVYAQM TLQPVPSYDK  120
EALLRSDLSL KSNKPQTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEL  180
VARDLHDNVW TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSVLFIRDE KQQLLLGIRR  240
ANRQPANLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRASPSEFV IPLAKYYKAV  300
CSNQVSLGMR FRMMFETEES GTRRYMGTIT GISDLDPLRW KNSQWRNLQV GWDESTAGER  360
RNRVSLWEIE PVTAPFFICP PPFFRSKRPR QPGMPDDDSS DLDNLLKKSM PWISDDFYMK  420
DPQSVPGLSL VQCFNMQQNP SLANSLQPNY MQSFPGSVLQ NLTGADLSRQ LGLAVPQLPQ  480
PNNLQFNAQR LPLQSQPLDQ LPKLPSSLNP LGSIMQSQQQ LGDISQQSKQ NLVTQTIPSS  540
QVQAQILQPQ TLVQNANILQ QQPSFQSHQL PRNLPQTLQQ NQQQHIVGQN QQQGVTQTQM  600
TDQVNQQLQM SDNQIQLQLL QKLQQQQQSL LMQQSVLQQP NQFVQLQDPQ KQLLEASQSF  660
SRSMRTNQLL EMPQTAPTSL PQSNIIQQQM TKNGNQTNAQ FSHMPQQLKF QQQQPGILPE  720
LPGQMGLPPS SGINHLPTVG SGTLTAAGAG ISGITEELPS CSTSPSTNNC VNVVHRVHQT  780
TAMGDDMAQS AATLMSPNAL ETMSCSANLV KDVQQKSDVK PSLNIAKNQK QGFFAPQTYQ  840
NGAMAQTDYL DTSSSTTSVC LSQNDVHLQQ NNNSSSYNPH SMLLRDISQD GELQADPRNN  900
VPYGANVDDQ LGVPMNSEQV LTKGITGLGK DLSNNLSSGG MLSNCENSKD PQHELSSSMV  960
SQSFGVPDMA FNSIDSTIND SSFLNRGPWA PPPQFQRMRT YTKVYKRGAV GRSIDITRYS  1020
GYAELKQDLA RRFGIEGQLE DGQRIGWKLV YVDHENDVLL VGDDPWEEFV NCVRCIKILS  1080
PQEVQQMSLN GDFGNPVLPN QACSSSDNGN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1712737045388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084285.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A067JV560.0A0A067JV56_JATCU; Auxin response factor
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19